Species | Chip | Original Probe Count | Custom CDF Name | Statistics of Current Version |
Statistics of Previous Version |
% of Common Probes in Version |
% of Common Probesets in Version |
% of Identical Probesets in Version |
R Packages | CDF Seq Map Desc | ||||||
Probe % | Probeset # | Probe % | Probeset # | Current | Previous | Current | Previous | Current | Previous | Source | Win32 | |||||
Bos_taurus | Bovine | 265627 | Bovine_Bt_ENSE | 32.3 | 12305 | 34.7 | 13044 | 100.00 | 93.10 | 100.00 | 94.33 | 89.82 | 84.73 | C P | C P | O |
Caenorhabditis_elegans | Celegans | 249165 | Celegans_Ce_ENSE | 67.8 | 34229 | 69.2 | 33864 | 99.85 | 97.83 | 89.13 | 90.10 | 86.42 | 87.35 | C P | C P | O |
Canis_familiaris | Canine2 | 473162 | Canine2_Cf_ENSE | 38.3 | 31559 | 39.3 | 32187 | 99.80 | 97.15 | 99.82 | 97.87 | 95.50 | 93.64 | C P | C P | O |
Canis_familiaris | Canine2PM | 486081 | Canine2PM_Cf_ENSE | 37.3 | 31559 | C P | C P | O | ||||||||
Danio_rerio | Zebrafish | 249752 | Zebrafish_Dr_ENSE | 53.3 | 17555 | 40.6 | 11280 | 68.94 | 90.68 | 49.81 | 77.53 | 40.28 | 62.70 | C P | C P | O |
Drosophila_melanogaster | DrosGenome1 | 195994 | DrosGenome1_Dm_ENSE | 90.2 | 21254 | 92.7 | 21273 | 99.84 | 97.16 | 78.38 | 78.31 | 74.55 | 74.48 | C P | C P | O |
Drosophila_melanogaster | Drosophila2 | 265400 | Drosophila2_Dm_ENSE | 70.3 | 21051 | 71.1 | 21140 | 99.75 | 98.68 | 78.01 | 77.68 | 73.74 | 73.43 | C P | C P | O |
Gallus_gallus | Chicken | 424097 | Chicken_Gg_ENSE | 32.0 | 23687 | 34.4 | 24448 | 100.00 | 92.90 | 100.00 | 96.89 | 93.79 | 90.87 | C P | C P | O |
Homo_sapiens | HCG110 | 30313 | HCG110_Hs_ENSE | 69.8 | 4702 | 72.4 | 4621 | 99.74 | 96.20 | 88.96 | 90.52 | 77.33 | 78.68 | C P | C P | O |
Homo_sapiens | HGFocus | 98149 | HGFocus_Hs_ENSE | 74.3 | 20602 | 77.1 | 20111 | 99.54 | 95.97 | 89.10 | 91.28 | 77.32 | 79.21 | C P | C P | O |
Homo_sapiens | HGU133A | 247965 | HGU133A_Hs_ENSE | 68.2 | 39646 | 72.3 | 39440 | 99.28 | 93.58 | 88.70 | 89.17 | 74.27 | 74.66 | C P | C P | O |
Homo_sapiens | HGU133A2 | 247899 | HGU133A2_Hs_ENSE | 68.2 | 39644 | 72.4 | 39439 | 99.28 | 93.58 | 88.70 | 89.16 | 74.28 | 74.66 | C P | C P | O |
Homo_sapiens | HGU133B | 249502 | HGU133B_Hs_ENSE | 44.9 | 21762 | 49.9 | 23578 | 96.95 | 87.25 | 88.60 | 81.78 | 74.18 | 68.46 | C P | C P | O |
Homo_sapiens | HGU133Plus2 | 604258 | HGU133Plus2_Hs_ENSE | 54.4 | 65671 | 58.5 | 66578 | 97.85 | 91.11 | 88.45 | 87.25 | 72.36 | 71.38 | C P | C P | O |
Homo_sapiens | HGU219 | 548517 | HGU219_Hs_ENSE | 76.6 | 77528 | 77.9 | 73965 | 99.07 | 97.44 | 87.80 | 92.03 | 78.14 | 81.90 | C P | C P | O |
Homo_sapiens | HGU95A | 201807 | HGU95A_Hs_ENSE | 72.3 | 26315 | 77.1 | 26494 | 99.42 | 93.27 | 89.60 | 88.99 | 75.24 | 74.73 | C P | C P | O |
Homo_sapiens | HGU95Av2 | 201800 | HGU95Av2_Hs_ENSE | 72.4 | 26280 | 77.1 | 26461 | 99.42 | 93.28 | 89.61 | 89.00 | 75.20 | 74.68 | C P | C P | O |
Homo_sapiens | HGU95B | 201862 | HGU95B_Hs_ENSE | 52.7 | 14964 | 55.5 | 15380 | 97.55 | 92.66 | 89.01 | 86.61 | 76.61 | 74.54 | C P | C P | O |
Homo_sapiens | HGU95C | 201867 | HGU95C_Hs_ENSE | 38.0 | 11405 | 42.0 | 12352 | 96.75 | 87.59 | 88.33 | 81.56 | 74.68 | 68.95 | C P | C P | O |
Homo_sapiens | HGU95D | 201858 | HGU95D_Hs_ENSE | 23.5 | 7491 | 27.1 | 8552 | 95.08 | 82.41 | 86.86 | 76.09 | 75.74 | 66.35 | C P | C P | O |
Homo_sapiens | HGU95E | 201863 | HGU95E_Hs_ENSE | 37.4 | 12340 | 43.8 | 13921 | 96.69 | 82.61 | 86.67 | 76.83 | 74.76 | 66.27 | C P | C P | O |
Homo_sapiens | HTHGU133A | 247899 | HTHGU133A_Hs_ENSE | 68.2 | 39644 | 72.4 | 39439 | 99.28 | 93.58 | 88.70 | 89.16 | 74.28 | 74.66 | C P | C P | O |
Homo_sapiens | HTHGU133B | 249803 | HTHGU133B_Hs_ENSE | 44.9 | 21760 | 49.9 | 23577 | 96.95 | 87.24 | 88.60 | 81.77 | 74.18 | 68.47 | C P | C P | O |
Homo_sapiens | HTHGU133PlusPM | 528052 | HTHGU133PlusPM_Hs_ENSE | 54.6 | 61922 | 58.3 | 62438 | 97.97 | 91.62 | 88.65 | 87.92 | 73.18 | 72.57 | C P | C P | O |
Homo_sapiens | Hu6800 | 131541 | Hu6800_Hs_ENSE | 71.0 | 17873 | 74.1 | 17629 | 99.52 | 95.37 | 89.32 | 90.56 | 73.26 | 74.28 | C P | C P | O |
Homo_sapiens | HuEx10stv2 | 5431924 | HuEx10stv2_Hs_ENSE | 28.9 | 442179 | 31.7 | 423668 | 96.96 | 88.38 | 86.34 | 90.11 | 69.67 | 72.72 | C P | C P | O |
Homo_sapiens | HuGene10stv1 | 788904 | HuGene10stv1_Hs_ENSE | 63.2 | 132189 | 65.1 | 127337 | 99.10 | 96.13 | 85.92 | 89.19 | 79.26 | 82.28 | C P | C P | O |
Homo_sapiens | HuGene11stv1 | 803478 | HuGene11stv1_Hs_ENSE | 61.9 | 132098 | 63.8 | 127231 | 99.10 | 96.14 | 85.91 | 89.20 | 79.27 | 82.30 | C P | C P | O |
Homo_sapiens | Mapping10KXba142 | 213380 | Mapping10KXba142_Hs_ENSE | 0.5 | 278 | 1.9 | 264 | 95.95 | 25.94 | 91.73 | 96.59 | 0.00 | 0.00 | C P | C P | O |
Homo_sapiens | Mapping250KNsp | 3236396 | Mapping250KNsp_Hs_ENSE | 0.6 | 6410 | 2.6 | 8751 | 94.31 | 22.09 | 89.00 | 65.19 | 0.16 | 0.11 | C P | C P | O |
Homo_sapiens | Mapping250KSty | 3236180 | Mapping250KSty_Hs_ENSE | 0.8 | 8206 | 3.3 | 10212 | 93.72 | 23.34 | 87.75 | 70.52 | 0.24 | 0.20 | C P | C P | O |
Homo_sapiens | Mapping50KHind240 | 1144880 | Mapping50KHind240_Hs_ENSE | 0.8 | 2281 | 2.9 | 2223 | 94.67 | 25.07 | 88.43 | 90.73 | 0.00 | 0.00 | C P | C P | O |
Homo_sapiens | Mapping50KXba240 | 1179200 | Mapping50KXba240_Hs_ENSE | 0.6 | 1769 | 2.3 | 1738 | 93.70 | 25.02 | 89.37 | 90.97 | 0.00 | 0.00 | C P | C P | O |
Homo_sapiens | NuGOHs1a520180 | 265687 | NuGOHs1a520180_Hs_ENSE | 71.4 | 43491 | 73.8 | 42604 | 99.06 | 95.92 | 89.68 | 91.55 | 77.94 | 79.56 | C P | C P | O |
Homo_sapiens | U133X3P | 673904 | U133X3P_Hs_ENSE | 55.2 | 60405 | 59.2 | 61077 | 97.87 | 91.19 | 88.80 | 87.83 | 71.32 | 70.53 | C P | C P | O |
Homo_sapiens | gnGNF1Ba | 250925 | gnGNF1Ba_Hs_ENSE | 29.3 | 18691 | 31.2 | 18881 | 98.75 | 92.66 | 88.17 | 87.28 | 80.10 | 79.29 | C P | C P | O |
Macaca_mulatta | Rhesus | 668485 | Rhesus_MAmu_ENSE | 34.0 | 29072 | 35.3 | 30052 | 100.00 | 96.28 | 100.00 | 96.74 | 90.99 | 88.03 | C P | C P | O |
Mus_musculus | HTMG430A | 250325 | HTMG430A_Mm_ENSE | 69.4 | 31786 | 69.1 | 29895 | 95.12 | 95.53 | 85.35 | 90.75 | 74.77 | 79.50 | C P | C P | O |
Mus_musculus | HTMG430B | 249071 | HTMG430B_Mm_ENSE | 40.9 | 15510 | 38.7 | 14540 | 88.28 | 93.31 | 82.41 | 87.91 | 73.94 | 78.87 | C P | C P | O |
Mus_musculus | HTMG430PM | 505190 | HTMG430PM_Mm_ENSE | 54.5 | 44953 | 53.2 | 42343 | 92.59 | 94.74 | 84.74 | 89.96 | 73.91 | 78.47 | C P | C P | O |
Mus_musculus | MGU74Av2 | 197993 | MGU74Av2_Mm_ENSE | 62.0 | 19059 | 62.2 | 18325 | 95.17 | 94.93 | 85.28 | 88.69 | 74.92 | 77.92 | C P | C P | O |
Mus_musculus | MGU74Bv2 | 197131 | MGU74Bv2_Mm_ENSE | 59.3 | 14871 | 59.1 | 14797 | 91.41 | 91.77 | 84.00 | 84.42 | 74.33 | 74.70 | C P | C P | O |
Mus_musculus | MGU74Cv2 | 182797 | MGU74Cv2_Mm_ENSE | 28.3 | 6740 | 27.7 | 6473 | 88.75 | 90.46 | 81.54 | 84.91 | 74.55 | 77.63 | C P | C P | O |
Mus_musculus | MOE430A | 249958 | MOE430A_Mm_ENSE | 69.5 | 31786 | 69.2 | 29895 | 95.12 | 95.53 | 85.35 | 90.75 | 74.77 | 79.50 | C P | C P | O |
Mus_musculus | MOE430B | 248704 | MOE430B_Mm_ENSE | 41.0 | 15510 | 38.8 | 14540 | 88.28 | 93.31 | 82.41 | 87.91 | 73.94 | 78.87 | C P | C P | O |
Mus_musculus | MoEx10stv1 | 4779314 | MoEx10stv1_Mm_ENSE | 26.4 | 330190 | 28.0 | 313432 | 94.95 | 89.72 | 87.03 | 91.68 | 73.81 | 77.75 | C P | C P | O |
Mus_musculus | MoGene10stv1 | 819132 | MoGene10stv1_Mm_ENSE | 58.1 | 128869 | 60.3 | 124977 | 96.04 | 92.65 | 85.96 | 88.63 | 79.62 | 82.10 | C P | C P | O |
Mus_musculus | MoGene11stv1 | 828268 | MoGene11stv1_Mm_ENSE | 57.3 | 128804 | 59.4 | 124925 | 96.03 | 92.63 | 85.95 | 88.62 | 79.62 | 82.10 | C P | C P | O |
Mus_musculus | Mouse4302 | 496468 | Mouse4302_Mm_ENSE | 55.4 | 44953 | 54.2 | 42343 | 92.59 | 94.74 | 84.74 | 89.96 | 73.91 | 78.47 | C P | C P | O |
Mus_musculus | Mouse430A2 | 249958 | Mouse430A2_Mm_ENSE | 69.5 | 31786 | 69.2 | 29895 | 95.12 | 95.53 | 85.35 | 90.75 | 74.77 | 79.50 | C P | C P | O |
Mus_musculus | Mu11KsubA | 131280 | Mu11KsubA_Mm_ENSE | 62.9 | 10264 | 66.1 | 10282 | 95.32 | 90.76 | 84.67 | 84.53 | 69.89 | 69.76 | C P | C P | O |
Mus_musculus | Mu11KsubB | 119580 | Mu11KsubB_Mm_ENSE | 46.5 | 9210 | 49.7 | 9228 | 97.67 | 91.53 | 86.13 | 85.97 | 75.46 | 75.31 | C P | C P | O |
Mus_musculus | NuGOMm1a520177 | 262909 | NuGOMm1a520177_Mm_ENSE | 63.9 | 32836 | 63.2 | 31282 | 94.19 | 95.27 | 84.79 | 89.00 | 77.14 | 80.97 | C P | C P | O |
Mus_musculus | gnGNF1Musa | 362266 | gnGNF1Musa_Mm_ENSE | 52.4 | 34523 | 50.9 | 32471 | 92.07 | 94.75 | 83.90 | 89.21 | 74.92 | 79.66 | C P | C P | O |
Rattus_norvegicus | HTRat230PM | 351132 | HTRat230PM_Rn_ENSE | 34.3 | 16108 | 37.1 | 17159 | 100.00 | 92.39 | 100.00 | 93.87 | 87.48 | 82.12 | C P | C P | O |
Rattus_norvegicus | HTRatFocus | 266962 | HTRatFocus_Rn_ENSE | 43.5 | 15822 | 46.3 | 16637 | 100.00 | 93.96 | 100.00 | 95.10 | 88.31 | 83.98 | C P | C P | O |
Rattus_norvegicus | RAE230A | 175477 | RAE230A_Rn_ENSE | 46.1 | 11336 | 49.3 | 11975 | 100.00 | 93.49 | 100.00 | 94.66 | 87.90 | 83.21 | C P | C P | O |
Rattus_norvegicus | RAE230B | 168984 | RAE230B_Rn_ENSE | 23.8 | 5368 | 26.3 | 5862 | 100.00 | 90.37 | 100.00 | 91.57 | 88.62 | 81.15 | C P | C P | O |
Rattus_norvegicus | RGU34A | 140317 | RGU34A_Rn_ENSE | 50.3 | 7761 | 54.1 | 8284 | 100.00 | 93.02 | 100.00 | 93.69 | 86.73 | 81.25 | C P | C P | O |
Rattus_norvegicus | RGU34B | 140312 | RGU34B_Rn_ENSE | 30.4 | 3953 | 35.5 | 4718 | 100.00 | 85.63 | 100.00 | 83.79 | 84.09 | 70.45 | C P | C P | O |
Rattus_norvegicus | RGU34C | 140284 | RGU34C_Rn_ENSE | 32.6 | 4516 | 37.4 | 5303 | 100.00 | 87.20 | 100.00 | 85.16 | 84.37 | 71.85 | C P | C P | O |
Rattus_norvegicus | RNU34 | 21305 | RNU34_Rn_ENSE | 62.7 | 1394 | 65.3 | 1442 | 100.00 | 96.12 | 100.00 | 96.67 | 90.39 | 87.38 | C P | C P | O |
Rattus_norvegicus | RTU34 | 20464 | RTU34_Rn_ENSE | 52.2 | 1027 | 56.0 | 1090 | 100.00 | 93.25 | 100.00 | 94.22 | 82.28 | 77.52 | C P | C P | O |
Rattus_norvegicus | RaEx10stv1 | 4108266 | RaEx10stv1_Rn_ENSE | 21.2 | 189048 | 22.3 | 191458 | 100.00 | 95.22 | 100.00 | 98.74 | 93.27 | 92.10 | C P | C P | O |
Rattus_norvegicus | RaGene10stv1 | 777760 | RaGene10stv1_Rn_ENSE | 54.1 | 77761 | 56.5 | 79552 | 100.00 | 95.62 | 100.00 | 97.75 | 93.35 | 91.25 | C P | C P | O |
Rattus_norvegicus | RaGene11stv1 | 788189 | RaGene11stv1_Rn_ENSE | 53.3 | 77750 | 55.7 | 79540 | 100.00 | 95.62 | 100.00 | 97.75 | 93.35 | 91.25 | C P | C P | O |
Rattus_norvegicus | Rat2302 | 342410 | Rat2302_Rn_ENSE | 35.2 | 16108 | 38.1 | 17159 | 100.00 | 92.39 | 100.00 | 93.87 | 87.48 | 82.12 | C P | C P | O |
Rattus_norvegicus | RatToxFX | 24535 | RatToxFX_Rn_ENSE | 45.1 | 1680 | 46.8 | 1737 | 100.00 | 96.39 | 100.00 | 96.72 | 91.61 | 88.60 | C P | C P | O |
Saccharomyces_cerevisiae | YGS98 | 138412 | YGS98_Sc_ENSE | 75.3 | 6247 | 78.0 | 6323 | 100.00 | 96.50 | 99.98 | 98.78 | 88.14 | 87.08 | C P | C P | O |
Saccharomyces_cerevisiae | Yeast2 | 120855 | Yeast2_Sc_ENSE | 51.2 | 5638 | 51.3 | 5837 | 100.00 | 99.86 | 100.00 | 96.59 | 99.13 | 95.75 | C P | C P | O |
Sus_scrofa | Porcine | 265635 | Porcine_Ss_ENSE | 16.3 | 7083 | 18.3 | 7798 | 100.00 | 88.91 | 100.00 | 90.83 | 91.18 | 82.82 | C P | C P | O |