Species | Chip | Original Probe Count | Custom CDF Name | Statistics of Current Version |
Statistics of Previous Version |
% of Common Probes in Version |
% of Common Probesets in Version |
% of Identical Probesets in Version |
R Packages | CDF Seq Map Desc | ||||||
Probe % | Probeset # | Probe % | Probeset # | Current | Previous | Current | Previous | Current | Previous | Source | Win32 | |||||
Arabidopsis_thaliana | AG | 131822 | AG_At_REFSEQ | 88.1 | 16005 | 88.2 | 15348 | 99.91 | 99.79 | 95.66 | 99.76 | 95.36 | 99.45 | C P | C P | O |
Arabidopsis_thaliana | AGRONOMICS1 | 6046951 | AGRONOMICS1_At_REFSEQ | 17.9 | 59107 | 17.9 | 57284 | 98.91 | 99.03 | 95.77 | 98.82 | 94.10 | 97.10 | C P | C P | O |
Arabidopsis_thaliana | ATH1121501 | 251078 | ATH1121501_At_REFSEQ | 89.2 | 43827 | 89.2 | 42193 | 99.95 | 99.85 | 95.96 | 99.67 | 95.69 | 99.40 | C P | C P | O |
Arabidopsis_thaliana | aragene10st | 628424 | aragene10st_At_REFSEQ | 91.6 | 54581 | C P | C P | O | ||||||||
Arabidopsis_thaliana | aragene11st | 628424 | aragene11st_At_REFSEQ | 91.6 | 54581 | C P | C P | O | ||||||||
Bos_taurus | Bovine | 265627 | Bovine_Bt_REFSEQ | 52.1 | 13674 | 49.3 | 14291 | 93.22 | 98.49 | 77.42 | 74.08 | 74.12 | 70.92 | C P A | C P A | O |
Caenorhabditis_elegans | Celegans | 249165 | Celegans_Ce_REFSEQ | 86.8 | 20771 | 86.8 | 20771 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | C P A | C P A | O |
Canis_familiaris | Canine2 | 473162 | Canine2_Cf_REFSEQ | 3.7 | 1176 | 3.4 | 1087 | 92.27 | 99.40 | 91.84 | 99.36 | 91.33 | 98.80 | C P A | C P A | O |
Canis_familiaris | Canine2PM | 486081 | Canine2PM_Cf_REFSEQ | 3.6 | 1176 | 3.3 | 1087 | 92.27 | 99.40 | 91.84 | 99.36 | 91.33 | 98.80 | C P A | C P A | O |
Canis_familiaris | cangene11st | 621953 | cangene11st_Cf_REFSEQ | 4.3 | 1269 | C P A | C P A | O | ||||||||
Danio_rerio | Zebrafish | 249752 | Zebrafish_Dr_REFSEQ | 58.0 | 9307 | 53.6 | 8833 | 89.31 | 96.63 | 87.64 | 92.35 | 79.94 | 84.23 | C P A | C P A | O |
Danio_rerio | zebgene10st | 1245559 | zebgene10st_Dr_REFSEQ | 43.5 | 25784 | C P A | C P A | O | ||||||||
Danio_rerio | zebgene11st | 1245558 | zebgene11st_Dr_REFSEQ | 43.5 | 25784 | C P A | C P A | O | ||||||||
Drosophila_melanogaster | DrosGenome1 | 195994 | DrosGenome1_Dm_REFSEQ | 92.3 | 19582 | 92.7 | 19763 | 100.00 | 99.64 | 100.00 | 99.08 | 100.00 | 99.08 | C P A | C P A | O |
Drosophila_melanogaster | Drosophila2 | 265400 | Drosophila2_Dm_REFSEQ | 74.1 | 21097 | 74.7 | 21364 | 100.00 | 99.18 | 100.00 | 98.75 | 100.00 | 98.75 | C P A | C P A | O |
Gallus_gallus | Chicken | 424097 | Chicken_Gg_REFSEQ | 16.9 | 4748 | 16.5 | 4645 | 97.31 | 99.81 | 97.68 | 99.85 | 96.97 | 99.12 | C P A | C P A | O |
Gallus_gallus | chigene10st | 464100 | chigene10st_Gg_REFSEQ | 26.3 | 5367 | C P A | C P A | O | ||||||||
Gallus_gallus | chigene11st | 464100 | chigene11st_Gg_REFSEQ | 26.3 | 5367 | C P A | C P A | O | ||||||||
Homo_sapiens | HCG110 | 30313 | HCG110_Hs_REFSEQ | 77.8 | 2688 | 77.7 | 2522 | 99.79 | 99.96 | 93.01 | 99.13 | 92.45 | 98.53 | C P A | C P A | O |
Homo_sapiens | HGFocus | 98149 | HGFocus_Hs_REFSEQ | 84.1 | 15341 | 84.0 | 14625 | 99.78 | 99.92 | 92.90 | 97.45 | 92.69 | 97.22 | C P A | C P A | O |
Homo_sapiens | HGU133A | 247965 | HGU133A_Hs_REFSEQ | 73.5 | 23263 | 73.3 | 22436 | 99.49 | 99.76 | 92.88 | 96.30 | 92.22 | 95.62 | C P A | C P A | O |
Homo_sapiens | HGU133A2 | 247899 | HGU133A2_Hs_REFSEQ | 73.5 | 23263 | 73.3 | 22436 | 99.49 | 99.76 | 92.88 | 96.30 | 92.22 | 95.62 | C P A | C P A | O |
Homo_sapiens | HGU133B | 249502 | HGU133B_Hs_REFSEQ | 44.4 | 14062 | 43.8 | 14533 | 97.55 | 98.78 | 89.71 | 86.80 | 89.20 | 86.31 | C P A | C P A | O |
Homo_sapiens | HGU133Plus2 | 604258 | HGU133Plus2_Hs_REFSEQ | 54.6 | 34797 | 54.1 | 35200 | 98.39 | 99.23 | 91.55 | 90.50 | 90.54 | 89.50 | C P A | C P A | O |
Homo_sapiens | HGU219 | 548517 | HGU219_Hs_REFSEQ | 82.5 | 33940 | 82.4 | 32786 | 99.62 | 99.80 | 93.24 | 96.53 | 92.68 | 95.94 | C P A | C P A | O |
Homo_sapiens | HGU95A | 201807 | HGU95A_Hs_REFSEQ | 76.3 | 16534 | 76.0 | 15810 | 99.47 | 99.82 | 92.61 | 96.85 | 92.02 | 96.23 | C P A | C P A | O |
Homo_sapiens | HGU95Av2 | 201800 | HGU95Av2_Hs_REFSEQ | 76.3 | 16537 | 76.0 | 15815 | 99.47 | 99.82 | 92.62 | 96.85 | 92.02 | 96.23 | C P A | C P A | O |
Homo_sapiens | HGU95B | 201862 | HGU95B_Hs_REFSEQ | 51.8 | 10276 | 51.3 | 10071 | 98.11 | 99.12 | 90.17 | 92.01 | 89.82 | 91.65 | C P A | C P A | O |
Homo_sapiens | HGU95C | 201867 | HGU95C_Hs_REFSEQ | 35.6 | 7368 | 35.2 | 7422 | 97.74 | 99.01 | 91.04 | 90.38 | 90.65 | 89.99 | C P A | C P A | O |
Homo_sapiens | HGU95D | 201858 | HGU95D_Hs_REFSEQ | 19.0 | 4387 | 18.7 | 4557 | 96.74 | 98.03 | 88.58 | 85.28 | 87.99 | 84.70 | C P A | C P A | O |
Homo_sapiens | HGU95E | 201863 | HGU95E_Hs_REFSEQ | 36.0 | 7335 | 35.7 | 7555 | 97.87 | 98.73 | 89.83 | 87.21 | 89.48 | 86.87 | C P A | C P A | O |
Homo_sapiens | HTHGU133A | 247899 | HTHGU133A_Hs_REFSEQ | 73.5 | 23263 | 73.3 | 22436 | 99.49 | 99.76 | 92.88 | 96.30 | 92.22 | 95.62 | C P A | C P A | O |
Homo_sapiens | HTHGU133B | 249803 | HTHGU133B_Hs_REFSEQ | 44.3 | 14062 | 43.8 | 14533 | 97.55 | 98.78 | 89.71 | 86.80 | 89.20 | 86.31 | C P A | C P A | O |
Homo_sapiens | HTHGU133PlusPM | 528052 | HTHGU133PlusPM_Hs_REFSEQ | 55.5 | 34623 | 55.1 | 34980 | 98.51 | 99.29 | 91.55 | 90.61 | 90.56 | 89.64 | C P A | C P A | O |
Homo_sapiens | Hu6800 | 131541 | Hu6800_Hs_REFSEQ | 76.1 | 10350 | 76.0 | 9964 | 99.74 | 99.85 | 93.15 | 96.76 | 92.83 | 96.43 | C P A | C P A | O |
Homo_sapiens | HuEx10stv2 | 5431924 | HuEx10stv2_Hs_REFSEQ | 22.6 | 40196 | 22.5 | 42667 | 98.65 | 99.12 | 90.05 | 84.83 | 87.23 | 82.18 | C P A | C P A | O |
Homo_sapiens | HuGene10stv1 | 788904 | HuGene10stv1_Hs_REFSEQ | 70.5 | 35063 | 70.5 | 34248 | 99.53 | 99.59 | 92.96 | 95.17 | 91.66 | 93.84 | C P A | C P A | O |
Homo_sapiens | HuGene11stv1 | 803478 | HuGene11stv1_Hs_REFSEQ | 69.1 | 35058 | 69.1 | 34243 | 99.53 | 99.59 | 92.95 | 95.17 | 91.66 | 93.84 | C P A | C P A | O |
Homo_sapiens | Mapping10KXba142 | 213380 | Mapping10KXba142_Hs_REFSEQ | 0.3 | 214 | 0.3 | 216 | 97.02 | 91.82 | 87.38 | 86.57 | 86.45 | 85.65 | C P A | C P A | O |
Homo_sapiens | Mapping250KNsp | 3236396 | Mapping250KNsp_Hs_REFSEQ | 0.4 | 4446 | 0.4 | 4464 | 96.37 | 96.63 | 89.68 | 89.31 | 89.47 | 89.11 | C P A | C P A | O |
Homo_sapiens | Mapping250KSty | 3236180 | Mapping250KSty_Hs_REFSEQ | 0.5 | 5360 | 0.5 | 5410 | 96.63 | 96.79 | 90.47 | 89.63 | 90.41 | 89.57 | C P A | C P A | O |
Homo_sapiens | Mapping50KHind240 | 1144880 | Mapping50KHind240_Hs_REFSEQ | 0.5 | 1665 | 0.5 | 1605 | 95.86 | 97.40 | 88.35 | 91.65 | 88.29 | 91.59 | C P A | C P A | O |
Homo_sapiens | Mapping50KXba240 | 1179200 | Mapping50KXba240_Hs_REFSEQ | 0.4 | 1297 | 0.4 | 1296 | 96.94 | 97.26 | 89.44 | 89.51 | 89.28 | 89.35 | C P A | C P A | O |
Homo_sapiens | NuGOHs1a520180 | 265687 | NuGOHs1a520180_Hs_REFSEQ | 73.9 | 30124 | 73.5 | 29166 | 99.08 | 99.52 | 92.70 | 95.75 | 92.34 | 95.37 | C P A | C P A | O |
Homo_sapiens | U133X3P | 673904 | U133X3P_Hs_REFSEQ | 52.4 | 34525 | 51.9 | 34867 | 98.34 | 99.15 | 91.56 | 90.66 | 90.67 | 89.78 | C P A | C P A | O |
Homo_sapiens | gnGNF1Ba | 250925 | gnGNF1Ba_Hs_REFSEQ | 30.9 | 8635 | 30.9 | 8527 | 99.34 | 99.31 | 93.14 | 94.32 | 92.79 | 93.96 | C P A | C P A | O |
Macaca_mulatta | Rhesus | 668485 | Rhesus_MAmu_REFSEQ | 4.3 | 1831 | 4.2 | 1792 | 97.72 | 99.97 | 97.87 | 100.00 | 97.76 | 99.89 | C P | C P | O |
Mus_musculus | HTMG430A | 250325 | HTMG430A_Mm_REFSEQ | 75.4 | 17386 | 75.2 | 16899 | 99.57 | 99.85 | 94.72 | 97.45 | 94.40 | 97.12 | C P A | C P A | O |
Mus_musculus | HTMG430B | 249071 | HTMG430B_Mm_REFSEQ | 38.8 | 9634 | 37.8 | 9551 | 96.26 | 98.80 | 89.08 | 89.85 | 88.65 | 89.43 | C P A | C P A | O |
Mus_musculus | HTMG430PM | 505190 | HTMG430PM_Mm_REFSEQ | 56.4 | 24322 | 55.8 | 23886 | 98.45 | 99.50 | 92.55 | 94.24 | 92.02 | 93.70 | C P A | C P A | O |
Mus_musculus | MGU74A | 201964 | MGU74A_Mm_REFSEQ | 57.7 | 10135 | C P A | C P A | O | ||||||||
Mus_musculus | MGU74Av2 | 197993 | MGU74Av2_Mm_REFSEQ | 65.9 | 11106 | 65.7 | 10773 | 99.65 | 99.90 | 95.02 | 97.96 | 94.85 | 97.78 | C P A | C P A | O |
Mus_musculus | MGU74Bv2 | 197131 | MGU74Bv2_Mm_REFSEQ | 59.2 | 8884 | 58.7 | 8725 | 98.83 | 99.60 | 94.21 | 95.93 | 93.84 | 95.55 | C P A | C P A | O |
Mus_musculus | MGU74Cv2 | 182797 | MGU74Cv2_Mm_REFSEQ | 26.4 | 4740 | 25.9 | 4636 | 97.46 | 99.23 | 90.17 | 92.19 | 89.89 | 91.91 | C P A | C P A | O |
Mus_musculus | MOE430A | 249958 | MOE430A_Mm_REFSEQ | 75.5 | 17386 | 75.3 | 16899 | 99.57 | 99.85 | 94.72 | 97.45 | 94.40 | 97.12 | C P A | C P A | O |
Mus_musculus | MOE430B | 248704 | MOE430B_Mm_REFSEQ | 38.9 | 9634 | 37.9 | 9551 | 96.26 | 98.80 | 89.08 | 89.85 | 88.65 | 89.43 | C P A | C P A | O |
Mus_musculus | MoEx10stv1 | 4779314 | MoEx10stv1_Mm_REFSEQ | 23.1 | 32727 | 22.8 | 32025 | 97.98 | 99.29 | 87.50 | 89.41 | 86.04 | 87.93 | C P A | C P A | O |
Mus_musculus | MoGene10stv1 | 819132 | MoGene10stv1_Mm_REFSEQ | 73.8 | 28664 | 73.9 | 28451 | 99.43 | 99.39 | 93.21 | 93.91 | 92.44 | 93.14 | C P A | C P A | O |
Mus_musculus | MoGene11stv1 | 828268 | MoGene11stv1_Mm_REFSEQ | 72.8 | 28664 | 72.8 | 28451 | 99.43 | 99.38 | 93.21 | 93.91 | 92.44 | 93.14 | C P A | C P A | O |
Mus_musculus | Mouse4302 | 496468 | Mouse4302_Mm_REFSEQ | 57.3 | 24322 | 56.7 | 23886 | 98.45 | 99.50 | 92.55 | 94.24 | 92.02 | 93.70 | C P A | C P A | O |
Mus_musculus | Mouse430A2 | 249958 | Mouse430A2_Mm_REFSEQ | 75.5 | 17386 | 75.3 | 16899 | 99.57 | 99.85 | 94.72 | 97.45 | 94.40 | 97.12 | C P A | C P A | O |
Mus_musculus | Mu11KsubA | 131280 | Mu11KsubA_Mm_REFSEQ | 65.3 | 6213 | 65.0 | 6009 | 99.48 | 99.90 | 94.14 | 97.34 | 94.04 | 97.24 | C P A | C P A | O |
Mus_musculus | Mu11KsubB | 119580 | Mu11KsubB_Mm_REFSEQ | 52.7 | 4095 | 52.6 | 4013 | 99.66 | 99.87 | 94.43 | 96.36 | 94.16 | 96.09 | C P A | C P A | O |
Mus_musculus | NuGOMm1a520177 | 262909 | NuGOMm1a520177_Mm_REFSEQ | 67.7 | 21657 | 67.4 | 21336 | 99.08 | 99.42 | 93.69 | 95.10 | 93.45 | 94.85 | C P A | C P A | O |
Mus_musculus | gnGNF1Musa | 362266 | gnGNF1Musa_Mm_REFSEQ | 50.0 | 22749 | 49.2 | 22174 | 97.80 | 99.27 | 92.20 | 94.59 | 91.97 | 94.36 | C P A | C P A | O |
Rattus_norvegicus | HTRat230PM | 351132 | HTRat230PM_Rn_REFSEQ | 45.6 | 15248 | 45.5 | 15236 | 99.78 | 99.92 | 99.65 | 99.73 | 99.42 | 99.49 | C P A | C P A | O |
Rattus_norvegicus | HTRatFocus | 266962 | HTRatFocus_Rn_REFSEQ | 57.0 | 14728 | 56.9 | 14717 | 99.80 | 99.93 | 99.65 | 99.73 | 99.45 | 99.52 | C P A | C P A | O |
Rattus_norvegicus | RAE230A | 175477 | RAE230A_Rn_REFSEQ | 61.0 | 10980 | 60.9 | 10973 | 99.85 | 99.95 | 99.72 | 99.78 | 99.53 | 99.59 | C P A | C P A | O |
Rattus_norvegicus | RAE230B | 168984 | RAE230B_Rn_REFSEQ | 31.8 | 5672 | 31.7 | 5663 | 99.63 | 99.87 | 99.42 | 99.58 | 99.21 | 99.36 | C P A | C P A | O |
Rattus_norvegicus | RGU34A | 140317 | RGU34A_Rn_REFSEQ | 63.8 | 5251 | 63.7 | 5248 | 99.85 | 99.97 | 99.77 | 99.83 | 99.49 | 99.54 | C P A | C P A | O |
Rattus_norvegicus | RGU34B | 140312 | RGU34B_Rn_REFSEQ | 37.5 | 4061 | 37.4 | 4045 | 99.49 | 99.90 | 99.29 | 99.68 | 99.16 | 99.56 | C P A | C P A | O |
Rattus_norvegicus | RGU34C | 140284 | RGU34C_Rn_REFSEQ | 41.1 | 4460 | 41.1 | 4454 | 99.82 | 99.97 | 99.69 | 99.82 | 99.60 | 99.73 | C P A | C P A | O |
Rattus_norvegicus | RNU34 | 21305 | RNU34_Rn_REFSEQ | 76.1 | 838 | 75.9 | 836 | 99.77 | 99.99 | 99.64 | 99.88 | 99.40 | 99.64 | C P A | C P A | O |
Rattus_norvegicus | RTU34 | 20464 | RTU34_Rn_REFSEQ | 66.3 | 656 | 66.2 | 656 | 99.86 | 99.97 | 99.70 | 99.70 | 99.24 | 99.24 | C P A | C P A | O |
Rattus_norvegicus | RaEx10stv1 | 4108266 | RaEx10stv1_Rn_REFSEQ | 22.3 | 27552 | 22.3 | 27571 | 99.87 | 99.95 | 99.77 | 99.70 | 99.50 | 99.43 | C P A | C P A | O |
Rattus_norvegicus | RaGene10stv1 | 777760 | RaGene10stv1_Rn_REFSEQ | 69.6 | 25508 | 69.5 | 25521 | 99.91 | 99.96 | 99.76 | 99.71 | 99.60 | 99.55 | C P A | C P A | O |
Rattus_norvegicus | RaGene11stv1 | 788189 | RaGene11stv1_Rn_REFSEQ | 68.6 | 25506 | 68.5 | 25519 | 99.91 | 99.96 | 99.76 | 99.71 | 99.60 | 99.55 | C P A | C P A | O |
Rattus_norvegicus | Rat2302 | 342410 | Rat2302_Rn_REFSEQ | 46.7 | 15248 | 46.7 | 15236 | 99.78 | 99.92 | 99.65 | 99.73 | 99.42 | 99.49 | C P A | C P A | O |
Rattus_norvegicus | RatToxFX | 24535 | RatToxFX_Rn_REFSEQ | 59.6 | 1563 | 59.5 | 1562 | 99.82 | 99.92 | 99.81 | 99.87 | 99.55 | 99.62 | C P A | C P A | O |
Xenopus_tropicalis | Xtropicalis | 648548 | Xtropicalis_Xt_REFSEQ | 40.7 | 19525 | 40.7 | 19496 | 99.82 | 99.96 | 99.51 | 99.66 | 99.32 | 99.47 | C P | C P | O |