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Download Custom CDF

Versions

25 24 23 22 21 20 19 18 17 16 15 14 13 12 11 10 9 8 7 6 5 4 3 2 1

Database builds used to generate custom CDF. And clicking the link "Version #" would lead to download page for the version

Version 25 (Data Sources)
Released on Jan 5, 2021
The sequence alignment tool is available at PASS

Custom CDF	R 4.0, BioC 3.11
Modified 'affy' Package	Source or Binary
R Package CustomCDF	Source or Binary
ENSE	Click Me
ENSG	Click Me
ENST	Click Me
ENTREZG	Click Me
GENCODEE	Click Me
GENCODEG	Click Me
GENCODET	Click Me
MIRBASEF	Click Me
MIRBASEG	Click Me
REFSEQ	Click Me

Version 24 (Data Sources)
Released on Oct 1, 2019

Custom CDF	R 3.6, BioC 3.9
Modified 'affy' Package	Source or Binary
R Package CustomCDF	Source or Binary
ENSE	Click Me
ENSG	Click Me
ENST	Click Me
ENTREZG	Click Me
GENCODEE	Click Me
GENCODEG	Click Me
GENCODET	Click Me
MIRBASEF	Click Me
MIRBASEG	Click Me
REFSEQ	Click Me

Version 23 (Data Sources)
Released on Oct 26, 2018

Custom CDF	R 3.5, BioC 3.5
Modified 'affy' Package	Source or Binary
R Package CustomCDF	Source or Binary
ENSE	Click Me
ENSG	Click Me
ENST	Click Me
ENTREZG	Click Me
GENCODEE	Click Me
GENCODEG	Click Me
GENCODET	Click Me
MIRBASEF	Click Me
MIRBASEG	Click Me
REFSEQ	Click Me

Version 22 (Data Sources)
Released on Jun 21, 2017
Our modified affy package is for analyzing Gene ST, Gene Exon or HTA20 in a traditional way.

Custom CDF	R 3.3, BioC 3.3
Modified 'affy_1.54.0' Package	Source or Binary
R Package CustomCDF	Source or Binary
AUGUSTUST	Click Me
ENSE	Click Me
ENSG	Click Me
ENST	Click Me
ENTREZG	Click Me
GENECODEE	Click Me
GENECODEG	Click Me
GENECODET	Click Me
JCVIG	Click Me
JCVIT	Click Me
MIRBASEF	Click Me
MIRBASEG	Click Me
REFSEQ	Click Me
TAIRG	Click Me
TAIRT	Click Me

Version 21 (Data Sources)
Released on Nov 28, 2016
Our modified affy package is for analyzing Gene ST, Gene Exon or HTA20 in a traditional way.

Custom CDF	R 3.3, BioC 3.3
Modified 'affy_1.52.0' Package	Source or Binary
R Package CustomCDF	Source or Binary
AUGUSTUST	Click Me
ENSE	Click Me
ENSG	Click Me
ENST	Click Me
ENTREZG	Click Me
GENECODEE	Click Me
GENECODEG	Click Me
GENECODET	Click Me
JCVIG	Click Me
JCVIT	Click Me
MIRBASEF	Click Me
MIRBASEG	Click Me
REFSEQ	Click Me
TAIRG	Click Me
TAIRT	Click Me

Version 20 (Data Sources)
Released on Nov 18, 2015.
Our modified affy package is for analyzing Gene ST, Gene Exon or HTA20 in a traditional way.

Custom CDF	R 3.2, BioC 3.2
Modified 'affy_1.48.0' Package	Source or Binary
ACEVIEWT	Click Me
AUGUSTUST	Click Me
ENSE	Click Me
ENSG	Click Me
ENST	Click Me
ENTREZG	Click Me
GENECODEE	Click Me
GENECODEG	Click Me
GENECODET	Click Me
JCVIG	Click Me
JCVIT	Click Me
LNCRNA	Click Me
MIRBASEF	Click Me
MIRBASEG	Click Me
REFSEQ	Click Me
TAIRG	Click Me
TAIRT	Click Me
TBGENE	Click Me
VEGAE	Click Me
VEGAG	Click Me
VEGAT	Click Me

Version 19 (Data Sources)
Released on Nov 13, 2014.

Custom CDF	R 3.1, BioC 3.0
Modified 'affy_1.44.1' Package	Source or Binary
ACEVIEWG	Click Me
ACEVIEWT	Click Me
AUGUSTUST	Click Me
ENSE	Click Me
ENSG	Click Me
ENST	Click Me
ENTREZG	Click Me
JCVIG	Click Me
JCVIT	Click Me
MIRBASEF	Click Me
MIRBASEG	Click Me
REFSEQ	Click Me
TAIRG	Click Me
TBGENE	Click Me
TAIRT	Click Me
VEGAE	Click Me
VEGAG	Click Me
VEGAT	Click Me

Version 18 (Data Sources)
Jan 23, 2014, version 18 is released. You might want download our modified affy package, if you got error message "The affy package is not designed for this array type, Please use either the oligo or xps package."
affy_1.40.0.tar.gz or affy_1.40.1.zip

Custom CDF	R 3.0, BioC 2.13
ACEVIEWG	Click Me
ACEVIEWT	Click Me
AUGUSTUST	Click Me
ENSE	Click Me
ENSG	Click Me
ENST	Click Me
ENTREZG	Click Me
JCVIG	Click Me
JCVIT	Click Me
MIRBASEF	Click Me
MIRBASEG	Click Me
REFSEQ	Click Me
TAIRG	Click Me
TBGENE	Click Me
TAIRT	Click Me
VEGAE	Click Me
VEGAG	Click Me
VEGAT	Click Me

Version 17 (Data Sources)
Apr 25, 2013, version 17 is released

Custom CDF	R 2.15, BioC 2.11	R 3.0, BioC 2.12
ACEVIEWG	Click Me	Click Me
ACEVIEWT	Click Me	Click Me
AUGUSTUST	Click Me	Click Me
ENSE	Click Me	Click Me
ENSG	Click Me	Click Me
ENST	Click Me	Click Me
ENTREZG	Click Me	Click Me
JCVIG	Click Me	Click Me
JCVIT	Click Me	Click Me
MIRBASEF	Click Me	Click Me
MIRBASEG	Click Me	Click Me
REFSEQ	Click Me	Click Me
TAIRG	Click Me	Click Me
TAIRT	Click Me	Click Me
VEGAE	Click Me	Click Me
VEGAG	Click Me	Click Me
VEGAT	Click Me	Click Me

Version 16 (Data Sources)
Sep 27, 2012, version 16 is released

Custom CDF	R 2.15, BioC 2.11
ACEVIEWG	Click Me
ACEVIEWT	Click Me
AUGUSTUST	Click Me
ENSE	Click Me
ENSG	Click Me
ENST	Click Me
ENTREZG	Click Me
JCVIG	Click Me
JCVIT	Click Me
MIRBASEF	Click Me
MIRBASEG	Click Me
REFSEQ	Click Me
TAIRG	Click Me
TAIRT	Click Me
VEGAE	Click Me
VEGAG	Click Me
VEGAT	Click Me

Version 15 (Data Sources)
Starting from Jan 18, 2012, version 15 is released
Dr. Philip de Groot from Wageningen University created some annotation libraries

Custom CDF	Release Date	R 2.14, BioC 2.9	R 2.15, BioC 2.10
ENTREZG	Jan 18, 2012	Click Me	Click Me
MIRBASEF	Jan 20, 2012	Click Me	Click Me
MIRBASEG	Jan 20, 2012	Click Me	Click Me
ENST	Mar 10, 2012	Click Me	Click Me
ENSG	Mar 10 2012	Click Me	Click Me
ENSE	Mar 10, 2012	Click Me	Click Me
VEGAT	Mar 10, 2012	Click Me	Click Me
VEGAG	Mar 10, 2012	Click Me	Click Me
VEGAE	Mar 10, 2012	Click Me	Click Me
REFSEQ	Mar 13, 2012	Click Me	Click Me
TAIRT	Mar 13, 2012	Click Me	Click Me
TAIRG	Mar 13, 2012	Click Me	Click Me
JCVIT	Mar 15, 2012	Click Me	Click Me
JCVIG	Mar 15, 2012	Click Me	Click Me
UG	Mar 18, 2012	Click Me	Click Me
AUGUSTUST	Mar 22, 2012	Click Me	Click Me

Version 14 (Data Sources)
Starting from March 11, 2011, version 14 is released

Custom CDF	Release Date	R 2.13, BioC 2.8	R 2.12, BioC 2.7
MIRBASEF	March 8, 2011	Click Me	Click Me
MIRBASEG	March 8, 2011	Click Me	Click Me
ENTREZG	Mar 10, 2011	Click Me	Click Me
ENST	March 11, 2011	Click Me	Click Me
REFSEQ	March 16, 2011	Click Me	Click Me
VEGAT	March 17, 2011	Click Me	Click Me
UG	March 21, 2011	Click Me	Click Me
TAIRT	March 22, 2011	Click Me	Click Me
TAIRG	March 22, 2011	Click Me	Click Me
JCVIT	March 24, 2011	Click Me	Click Me
JCVIG	March 24, 2011	Click Me	Click Me
ENSE	April 2, 2011	Click Me	Click Me
ENSG	April 2, 2011	Click Me	Click Me
VEGAE	April 2, 2011	Click Me	Click Me
VEGAG	April 2, 2011	Click Me	Click Me

Version 13 (Data Sources)
Starting from July 6, version 13.0.0 is released

Custom CDF	Release Date
ENTREZG	July 6, 2010	Click Me
REFSEQ	July 6, 2010	Click Me
ENSG	July 12, 2010	Click Me
ENSE	July 12, 2010	Click Me
ENST	July 12, 2010	Click Me
VEGAG	July 12, 2010	Click Me
VEGAE	July 12, 2010	Click Me
VEGAT	July 12, 2010	Click Me
TAIRG	July 12, 2010	Click Me
TAIRT	July 12, 2010	Click Me
UG	July 15, 2010	Click Me
MIRBASEF	August 10, 2010	Click Me
MIRBASEG	August 10, 2010	Click Me

Version 12 (Data Sources)
On Dec 2, 2009, version 12.0.0 is upgraded to 12.1.0 in order to be compatible with R 2.10 and Bioc 2.5

Custom CDF	Release Date
ENTREZG	July 30, 2009	Click Me
UG	July 30, 2009	Click Me
ENSG	July 30, 2009	Click Me
VEGAG	July 30, 2009	Click Me
ENSE	July 30, 2009	Click Me
VEGAE	July 30, 2009	Click Me
ENST	July 30, 2009	Click Me
VEGAT	July 30, 2009	Click Me
REFSEQ	July 30, 2009	Click Me
TAIRT	July 30, 2009	Click Me
TAIRG	July 30, 2009	Click Me
MIRBASEG	August 21, 2009	Click Me
MIRBASEF	August 21, 2009	Click Me

Version 11 (Data Sources)

Custom CDF	Release Date
ENTREZG	November 12, 2008	Click Me
UG	November 12, 2008	Click Me
ENSG	November 12, 2008	Click Me
VEGAG	November 12, 2008	Click Me
ENSE	November 12, 2008	Click Me
VEGAE	November 12, 2008	Click Me
ENST	November 12, 2008	Click Me
VEGAT	November 12, 2008	Click Me
REFSEQ	November 12, 2008	Click Me
TAIRT	November 12, 2008	Click Me
TAIRG	November 12, 2008	Click Me

Version 10 Download Statistics (Annotation packages for some customCDF libraries are at http://nugo-r.bioinformatics.nl/NuGO_R.html. Courtesy of Philip de Groot. We appreciate his help)

Species	Affy Annotation	ENSEMBL	ENTREZG	Genome	Genome for ENTREZG	REFSEQ	UG	dbSNP
Arabidopsis thaliana	na23, May 31, 2007	NA	Jun 28, 2007	1con.01222004, file date is 08/10/2006	NA	NCBI, Jul 27, 2007	61	NA
Bos taurus	na23, May 31, 2007	46	Dec 28, 2006	Btau_3.1.46	Build 3, Version 1, Jan 3, 2007	24	85	NA
Canis familiaris	na23, May 31, 2007	46	Sep 6, 2005	BROADD2.46	Build 2, Version 1, Sep 8, 2005	UCSC, Aug 30, 2007	19	127, Jul 22, 2006
Drosophila melanogaster	na23, May 31, 2007	46	Nov 29, 2006	BDGP4.3.46	NA	UCSC, Sep 3, 2007	50	NA
Danio rerio	na23, May 31, 2007	46	Feb 27, 2007	ZFISH7.46	Build 2, Version 1, Mar 1, 2007	24	105	127, Nov 1, 2005
Gallus gallus	na23, May 31, 2007	46	Nov 29, 2006	WASHUC2.46	Build 2, Version 1, Nov 30, 2006	UCSC, Aug 30, 2007	34	127, Jul 22, 2006
Homo sapiens	na23, May 31, 2007	46	Sep 11 2006	NCBI36.46	Build 36, Version 2, Sep 14, 2006	24	204	127, Apr 18, 2007
Macaca mulatta	na23, May 31, 2007	46	Jun 22, 2006	NA	Build 1, Version 1, Jun 23, 2006	NA	8	NA
Mus musculus	na23, May 31, 2007	46	Jun 28, 2007	NCBIM36.46	Build 37, Version 1, Jul 5, 2007	24	165	127, Jun 23, 2006
Oryza sativa	na23, May 31, 2007	NA	NA	NA	NA	NCBI, Jul 27, 2007	68	127, Oct 31, 2005
Pan troglodytes	NA	46	Sep 26, 2006	CHIMP2.1.46	Build 2, Version 1, Oct 4, 2006	NA	NA	NA
Rattus norvegicus	na23, May 31, 2007	46	Jun 28, 2006	RGSC3.4.46	Build 4, Version 1, Jul 5, 2006	24	165	127, Mar 5, 2007

Version 9 Download Statistics

Species	Affy Annotation	ENSEMBL	ENTREZG	Genome	Genome for ENTREZG	REFSEQ	TAIR	UG	dbSNP
Arabidopsis thaliana	na22, 03/09/2007	NA	NA	1con.01222004, file date is 08/10/2006	NA	NCBI, Jan 11, 2007	9/07/2006	56	NA
Bos taurus	na22, 03/09/2007	42	12/08/2006	Btau_2.0.42	Build 3, Version 1, 01/03/2007	22	NA	82	NA
Canis familiaris	na22, 03/09/2007	42	09/06/2005	BROADD2.42	Build 2, Version 1, 09/08/2005	UCSC, Feb 17, 2007	NA	17	126
Drosophila melanogaster	na22, 03/09/2007	42	11/29/2006	BDGP4.3.42	NA	UCSC, Feb 15, 2007	NA	46	NA
Danio rerio	na22, 03/09/2007	42	07/14/2005	ZFISH6.42	Build 1, Version 1, 07/05/2005	22	NA	100	126
Gallus gallus	na22, 03/09/2007	42	11/29/2006	WASHUC2.42	Build 2, Version 1, 11/30/2006	UCSC, Feb 16, 2007	NA	32	126
Homo sapiens	na22, 03/09/2007	42	09/11/2006	NCBI36.42	Build 36, Version 2, 09/14/2006	22	NA	199	127
Macaca mulatta	na22, 03/09/2007	42	06/22/2006	NA	Build 1, Version 1, 06/23/2006	NA	NA	6	NA
Mus musculus	na22, 03/09/2007	42	05/04/2006	NCBIM36.42	Build 36, Version 1, 05/08/2006	22	NA	161	126
Oryza sativa	na22, 03/09/2007	NA	NA	NA	NA	NCBI, Jan 11, 2007	NA	65	126
Pan troglodytes	NA	42	09/26/2006	CHIMP2.1.42	Build 2, Version 1, 10/04/2006	NA	NA	NA	NA
Rattus norvegicus	na22, 03/09/2007	42	06/28/2006	RGSC3.4.42	Build 4, Version 1, 07/05/2006	22	NA	160	126

Version 8 Download Statistics

Species	ENSEMBL	ENTREZG	Genome	REFSEQ	TAIR	TIGR	UniGene	dbSNP
Arabidopsis thaliana	NA	NA	8/10/2006	17	8/10/2006	12/1/2005	53	NA
Canis familiaris	39	9/6/2005	BROADD1.apr	17	NA	NA	15	125
Drosophila melanogaster	39	NA	BDGP4.2.apr	17	NA	NA	44	NA
Danio rerio	39	7/14/2005	ZFISH6.jun	17	NA	NA	91	125
Gallus gallus	39	NA	WASHUC1.jun	17	NA	NA	30	125
Homo sapiens	39	3/3/2006	NCBI36.jun	17	NA	NA	192	126
Mus musculus	39	5/4/2006	NCBIM36.jun	17	NA	NA	155	126
Oryza sativa	NA	NA	NA	17	NA	16	61	125
Pan troglodytes	39	5/25/2005	CHIMP1A.jun	NA	NA	NA	NA	NA
Rattus norvegicus	39	7/15/2005	RGSC3.4.jun	17	NA	NA	154	125
Vitis vinifera	NA	NA	NA	NA	NA	4	18	NA

Version 7 Download Statistics

Species	UniGene	Genome	ENSEMBL	Entrez Gene	RefSeq	TIGR	dbSNP
Arabidopsis	51	N/A	N/A	N/A	15	1-Dec	N/A
Dog	13	BROADD1.feb	37	NCBI2.1	15	N/A	125
Drosophila	41	BDGP4.feb	37	N/A	15	N/A	N/A
Zebrafish	90	ZFISH5.feb	37	NCBI1.1	15	N/A	125
Chicken	29	WASHUC1.feb	37	N/A	15	N/A	125
Human	189	NCBI35.feb	37	NCBI36.1	15	N/A	125
Mouse	152	NCBIM34.mar	37	NCBI35.1	15	N/A	125
Rice	59	N/A	N/A	N/A	15	16	125
Chimpanzee	N/A	CHIMP1A.mar	37	N/A	N/A	N/A	N/A
Rat	151	RGSC3.4.mar	37	NCBI3.1	15	N/A	125
Grape	17	N/A	N/A	N/A	N/A	4	N/A

Version 6 Download Statistics

	UniGene	Genome	ENSEMBL	Entrez Gene	RefSeq	DoTS	dbSNP
Human	186	35.1	32	35.1	12	9	124
Mouse	148	34	32	34	12	10	124
Rat	144	3.4	32	3.4	12	n/a	124

Version 5 Download Statistics

	UniGene	Genome	ENSEMBL	Entrez Gene	RefSeq	DoTS	dbSNP
Human	183	35.1	30	35.1	9	9	124
Mouse	146	33.1	30	33	9	10	124
Rat	142	3.4	30	3.1	9	n/a	124

Version 4 Download Statistics

	UniGene	Genome	ENSEMBL	Entrez Gene	RefSeq	DoTS	dbSNP
Human	180	35.1	27	35.1	9	9	124
Mouse	144	33.1	27	33	9	9	124
Rat	139	3.1	27	2	9	n/a	124

Version 3 Download Statistics

	UniGene	Genome	ENSEMBL	Entrez Gene	RefSeq	DoTS	dbSNP
Human	176	35.1	27	35.1	8	9	123
Mouse	142	33.1	27	33	8	9	123
Rat	137	3.1	27	2	8	n/a	123

Version 2 Download Statistics

	UniGene	Genome	ENSEMBL	Entrez Gene	RefSeq	DoTS	dbSNP
Human	175	35.1	25.1	35.1	7	9	122
Mouse	141	33.1	25.1	33	7	9	122
Rat	135	3.1	25.1	2	7	n/a	122

Version 1 Download Statistics

	UniGene	Genome	ENSEMBL	RefSeq
Human	170	34.1	23.1	7
Mouse	136	32	23.1	7
Rat	131	3.1	23.1	7

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